Helper function to select "best" K based on minimizing cross-entropy criteria from sNMF results — snmf_bestK • algatr

Helper function to select "best" K based on minimizing cross-entropy criteria from sNMF results

Usage

snmf_bestK(snmf_proj, K, quiet)

Arguments

snmf_proj: object of type snmfProject
K: integer corresponding to K-value
quiet: whether to operate quietly and suppress the results of cross-entropy scores (defaults to TRUE; only does so if more than one K-value); only displays run with minimum cross-entropy

Value

list with best K-value and run number and all cross-entropy scores

See also

Other Imputation functions: gen_to_geno(), geno_to_dosage(), simple_impute(), snmf_crossent_helper(), str_impute()