Create gt table of LFMM results

Create gt table of LFMM results

Usage

lfmm_table(
  df,
  sig = 0.05,
  sig_only = TRUE,
  top = FALSE,
  order = FALSE,
  var = NULL,
  rows = NULL,
  digits = 2,
  footnotes = TRUE
)

Arguments

df

df element from lfmm_run results

sig

alpha level for determining candidate snps (defaults to 0.5)

sig_only

only include SNPs that exceeded the significance threshold in the table (defaults to TRUE)

top

if there are SNPs that are significantly associated with multiple environmental variables, only display the top association (i.e., variable with the maximum B value; defaults to FALSE)

order

if TRUE, will order rows by decreasing B value (defaults to FALSE and orders rows based on variable)

var

display significant SNPs associated with particular environmental variable (defaults to NULL)

rows

number of rows to include in table (defaults to NULL)

digits

number of decimal points to include (defaults to 2)

Value

table of LFMM results

See also

Other LFMM functions: lfmm_df(), lfmm_do_everything(), lfmm_manhattanplot(), lfmm_qqplot(), lfmm_run(), lfmm_test_tidy(), quick_elbow(), select_K()